Strange Hadrons from the ALCOR Rehadronization Model

Hadron multiplicities --- especially for strange particles --- are calculated in the framework of the algebraic coalescence rehadronization model (ALCOR), which counts for redistribution of quarks into hadrons for relativistic heavy-ion collisions. The influence of Bjorken flow on the final hadronic composition are incorporated in the model. A comparison is made with the CERN SPS NA35 $S+S$ and $p+p$ experiments. The analysis of these experiments with ALCOR shows a strangeness enhancement for S+S collisions and a possible formation of a sort of semi-deconfined state of the matter. Predictions for Pb+Pb collisions (NA49) are also presented.Comment: 14 pages, LaTeX, Review to appear in Proceedings of Strangeness'95, Tucson, Arizona, Jan. 4--6 1995. (American Institute of Physics

Faces of quark matter

Based on an analysis in the framework of a coalescence hadronization model (ALCOR) we conclude that in heavy ion collisions at CERN SPS and RHIC energies a new type of matter, the massive quark-antiquark matter is produced.Comment: Talk given at Budapest Workshop on Quark and Hadron Dynamics in Relativistic Heavy Ion Collisions (BP 2002) Budapest, Hungary, 3-7 Mar 2002. 12 pages in Latex, 8 PS figure. Submitted to Heavy Ion Physics. Note added in proo

Pion and Kaon Spectra from Distributed Mass Quark Matter

After discussing some hints for possible masses of quasiparticles in quark matter on the basis of lattice equation of state, we present pion and kaon transverse spectra obtained by recombining quarks with distributed mass and thermal cut power-law momenta as well as fragmenting by NLO pQCD with intrinsic $k_T$ {and nuclear} broadening.Comment: Talk given at SQM 200

Structure-Function of U11 snRNA in the Minor Splicing Pathway

In human, the majority of protein coding genes are interrupted by dispensable intervening sequences (introns). These introns are removed by nuclear precursor (pre) mRNA splicing process to produce a mature mRNA needed for productive protein production in the cell. We are studying the splicing of minor class or U12-type introns which are spliced by U11, U12, U4atac, U5 and U6atac snRNAs. U11 snRNA binds to the 5’ end or splice site of the intron by RNA-RNA base-pairing to initiate the splicing process. Our results show the functionality of the genetic mutation suppressor assay in establishing the role of U11 snRNA in nuclear pre-mRNA splicing.https://engagedscholarship.csuohio.edu/u_poster_2012/1041/thumbnail.jp

High-frequency jet ventilation for minimizing breathing-related liver motion during percutaneous radiofrequency ablation of multiple hepatic tumours

Movements of the liver caused by spontaneous breathing (during sedation or local anaesthesia) or by ventilation during anaesthesia are a source of concern in CT-guided procedures because of the limited spatial and contrast resolution of unenhanced imaging, artifacts caused by the probes and the relatively low temporal resolution of the fluoroscopy mode. During CT-guided radiofrequency ablation (RFA), it is essential that the lesion can be visualized optimally and that the ablation probe is positioned accurately to avoid non-target injuries. We therefore used high-frequency jet ventilation and general anaesthesia to minimize ventilation-related liver movement and provide optimal conditions for a patient undergoing RFA of hepatic metastases. The technical and anaesthetic considerations are discussed, and a specific limitation of transcutaneous Pco2 measurement during activation of the ablation is reported for the first tim

Correlation between nucleotide composition and folding energy of coding sequences with special attention to wobble bases

Background: The secondary structure and complexity of mRNA influences its accessibility to regulatory molecules (proteins, micro-RNAs), its stability and its level of expression. The mobile elements of the RNA sequence, the wobble bases, are expected to regulate the formation of structures encompassing coding sequences. Results: The sequence/folding energy (FE) relationship was studied by statistical, bioinformatic methods in 90 CDS containing 26,370 codons. I found that the FE (dG) associated with coding sequences is significant and negative (407 kcal/1000 bases, mean +/- S.E.M.) indicating that these sequences are able to form structures. However, the FE has only a small free component, less than 10% of the total. The contribution of the 1st and 3rd codon bases to the FE is larger than the contribution of the 2nd (central) bases. It is possible to achieve a ~ 4-fold change in FE by altering the wobble bases in synonymous codons. The sequence/FE relationship can be described with a simple algorithm, and the total FE can be predicted solely from the sequence composition of the nucleic acid. The contributions of different synonymous codons to the FE are additive and one codon cannot replace another. The accumulated contributions of synonymous codons of an amino acid to the total folding energy of an mRNA is strongly correlated to the relative amount of that amino acid in the translated protein. Conclusion: Synonymous codons are not interchangable with regard to their role in determining the mRNA FE and the relative amounts of amino acids in the translated protein, even if they are indistinguishable in respect of amino acid coding.Comment: 14 pages including 6 figures and 1 tabl